Mooney SD, Krishnan VG, Evani US (2010) - Bioinformatic tools for identifying disease gene and SNP candidates. - Methods in molecular biology (Clifton, N.J.), pubmed:20238089

Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, et al (2010) - In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. - Human mutation, pubmed:20052762

Li S, Iakoucheva LM, Mooney SD, Radivojac P (2010) - Loss of post-translational modification sites in disease. - Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pubmed:19908386

Li B, Krishnan VG, Mort ME, Xin F, Kamati KK, et al (2009) - Automated inference of molecular mechanisms of disease from amino acid substitutions. - Bioinformatics (Oxford, England), pubmed:19734154

Chen JY, Youn E, Mooney SD (2009) - Connecting protein interaction data, mutations, and disease using bioinformatics. - Methods in molecular biology (Clifton, N.J.), pubmed:19381537

Sanford JR, Wang X, Mort M, Vanduyn N, Cooper DN, et al (2009) - Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. - Genome research, pubmed:19116412

Sinthuwiwat T, Poowasanpetch P, Wongngamrungroj A, Promso S, Auewarakul C, et al (2008) - High-resolution melting curve analysis for genotyping of common SNP in MTHFR gene using fixed-cell suspension. - Molecular and cellular probes, pubmed:18725286

Radivojac P, Baenziger PH, Kann MG, Mort ME, Hahn MW, et al (2008) - Gain and loss of phosphorylation sites in human cancer. - Bioinformatics (Oxford, England), pubmed:18689832

Si Y, Pulliam AC, Linka Y, Ciccone S, Leurs C, et al (2008) - Overnight transduction with foamyviral vectors restores the long-term repopulating activity of Fancc-/- stem cells. - Blood, pubmed:18684868

Wang X, Wang G, Shen C, Li L, Wang X, et al (2008) - Using RNase sequence specificity to refine the identification of RNA-protein binding regions. - BMC genomics, pubmed:18366606

Radivojac P, Peng K, Clark WT, Peters BJ, Mohan A, et al (2008) - An integrated approach to inferring gene-disease associations in humans. - Proteins, pubmed:18300252

Mooney SD, Baenziger PH (2008) - Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group. - Briefings in bioinformatics, pubmed:18057072

Tocharoentanaphol C, Promso S, Zelenika D, Lowhnoo T, Tongsima S, et al (2008) - Evaluation of resequencing on number of tag SNPs of 13 atherosclerosis-related genes in Thai population. - Journal of human genetics, pubmed:18043865

Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, et al (2008) - MutDB: update on development of tools for the biochemical analysis of genetic variation. - Nucleic acids research, pubmed:17827212

Altman RB, Benowitz N, Gurwitz D, Lunshof J, Relling M, et al (2007) - Genetic nondiscrimination legislation: a critical prerequisite for pharmacogenomics data sharing. - Pharmacogenomics, pubmed:17465717

Youn E, Peters B, Radivojac P, Mooney SD (2007) - Evaluation of features for catalytic residue prediction in novel folds. - Protein science : a publication of the Protein Society, pubmed:17189479

Peters B, Moad C, Youn E, Buffington K, Heiland R, et al (2006) - Identification of similar regions of protein structures using integrated sequence and structure analysis tools. - BMC structural biology, pubmed:16526955

Farrow EG, Davis SI, Mooney SD, Beighton P, Mascarenhas L, et al (2006) - Extended mutational analyses of FGFR1 in osteoglophonic dysplasia. - American journal of medical genetics. Part A, pubmed:16470795

Mooney SD, Liang MH, DeConde R, Altman RB (2005) - Structural characterization of proteins using residue environments. - Proteins, pubmed:16245324

Dantzer J, Moad C, Heiland R, Mooney S (2005) - MutDB services: interactive structural analysis of mutation data. - Nucleic acids research, pubmed:15980479

Larsson T, Davis SI, Garringer HJ, Mooney SD, Draman MS, et al (2005) - Fibroblast growth factor-23 mutants causing familial tumoral calcinosis are differentially processed. - Endocrinology, pubmed:15961556

Mooney S (2005) - Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. - Briefings in bioinformatics, pubmed:15826356

Babbitt PC, Bourne PE, Mooney SD (2005) - Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure. - Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pubmed:15759637

Larsson T, Yu X, Davis SI, Draman MS, Mooney SD, et al (2005) - A novel recessive mutation in fibroblast growth factor-23 causes familial tumoral calcinosis. - The Journal of clinical endocrinology and metabolism, pubmed:15687325

Mooney SD, Altman RB (2003) - MutDB: annotating human variation with functionally relevant data. - Bioinformatics (Oxford, England), pubmed:14512363

Knudsen GM, Nishida CR, Mooney SD, Ortiz de Montellano PR (2003) - Nitric-oxide synthase (NOS) reductase domain models suggest a new control element in endothelial NOS that attenuates calmodulin-dependent activity. - The Journal of biological chemistry, pubmed:12805387

Mooney SD, Klein TE, Altman RB, Trifiro MA, Gottlieb B (2003) - A functional analysis of disease-associated mutations in the androgen receptor gene. - Nucleic acids research, pubmed:12682377

Mooney SD, Klein TE (2002) - Structural models of osteogenesis imperfecta-associated variants in the COL1A1 gene. - Molecular & cellular proteomics : MCP, pubmed:12488462

Mooney SD, Klein TE (2002) - The functional importance of disease-associated mutation. - BMC bioinformatics, pubmed:12220483

Mooney SD, Kollman PA, Klein TE (2002) - Conformational preferences of substituted prolines in the collagen triple helix. - Biopolymers, pubmed:11979516