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Gene ID: CALCA
Symbol
Refseq RNA
Refseq Protein
Swiss-Prot Gene
dbSNP SNP
Swiss-Prot Var.
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Non-Synonymous SNPs
Synonymous SNPs
Intronic SNPs
Untranslated mRNA SNPs
Gene Variants
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No SNP-gene mapping image available.
Gene Info
Annotation Info
Description:
calcitonin ALCA preproprotein
Swiss-Prot Source:
CALCA_HUMAN
CALC_HUMAN
Chromosome:
11
NCBI mRNA Source:
NM_001033952
Gene length:
3783
NCBI Protein Source:
NP_001029124
Exons:
4
Gene Symbol:
CALCA
Number of Transcript Variants
2
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Mutation List
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Source ID
AA Position
(help?)
WT -> MT
(help?)
Sequence
Phenotype
Structure
PubMed
SIFT Score
(help?)
SWISS:VAR_025271
2
G R
Swiss-Prot
None
0.13
DBSNP:rs5239
56
N D
NCBI
In dbsnp.
None
Not scored
SWISS:VAR_025272
67
E K
Swiss-Prot
None
0.05
DBSNP:rs5241
75
S R
NCBI
In dbsnp.
None
Not scored
SWISS:VAR_025273
123
S T
Swiss-Prot
None
0.11
*
DBSNP:rs13306224
137
Q P
NCBI
In dbsnp.
None
Not scored
SWISS:VAR_025274
138
Q P
Swiss-Prot
None
0.21
*
Synonymous Mutations
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Source ID
AA Position
(help?)
WT -> MT
(help?)
Sequence
Phenotype
Structure
PubMed
DBSNP:rs5240
58
V V
NCBI
In dbsnp
None
DBSNP:rs2644689
84
C C
NCBI
In dbsnp
None
Intronic SNPs
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Source ID
Nucleotide
Position
WT -> MT
Sequence
Phenotype
Strand
PubMed
DBSNP:rs1010042
14947484
A C
NCBI
In dbsnp
reverse
DBSNP:rs2071411
14947597
C G
NCBI
In dbsnp
reverse
DBSNP:rs12576047
14947915
A T
NCBI
In dbsnp
forward
DBSNP:rs7925191
14948377
A G
NCBI
In dbsnp
forward
DBSNP:rs2856867
14949204
C G
NCBI
In dbsnp
reverse
DBSNP:rs2856866
14949205
C G
NCBI
In dbsnp
reverse
DBSNP:rs5238
14949908
G T
NCBI
In dbsnp
reverse
DBSNP:rs5237
14950031
A G
NCBI
In dbsnp
reverse
DBSNP:rs7124346
14950159
G T
NCBI
In dbsnp
forward
DBSNP:rs7110615
14950179
A G
NCBI
In dbsnp
forward
Untranslated mRNA SNPs
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Source ID
Nucleotide
Position
WT -> MT
Sequence
Phenotype
Strand
PubMed
DBSNP:rs2644688
14946888
A T
NCBI
In dbsnp
forward
DBSNP:rs2644690
14950351
A G
NCBI
In dbsnp
forward
Transcript Variants
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MutDB Link
Refseq mRNA
NCBI Protein
Description
NM_001033953
NM_001033953
NP_001029125
calcitonin isoform CGRP preproprotein
NM_001741
NM_001741
NP_001732
calcitonin isoform CALCA preproprotein
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Gene Index: C
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